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  5. Len_g38315

Len_g38315


Description : not classified & original description: none


Gene families : OG0002540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002540_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g38315

Target Alias Description ECC score Gene Family Method Actions
AT3G16640 TCTP translationally controlled tumor protein 0.02 OrthoFinder output from all 47 species
Adi_g018798 TCTP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g053905 TCTP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g53154 TCTP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14653 TCTP not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000964 TCTP not classified & original description: CDS=1-306 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000310.45 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01017723001 No alias Translationally-controlled tumor protein homolog... 0.04 OrthoFinder output from all 47 species
GSVIVT01031135001 TCTP Translationally-controlled tumor protein homolog... 0.03 OrthoFinder output from all 47 species
LOC_Os11g43900.1 LOC_Os11g43900 Translationally-controlled tumor protein homolog... 0.02 OrthoFinder output from all 47 species
Lfl_g36691 TCTP not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g26040.1 TCTP Translationally-controlled tumor protein homolog... 0.02 OrthoFinder output from all 47 species
Pir_g12787 TCTP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47676 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c18_20180V3.1 TCTP, Pp3c18_20180 translationally controlled tumor protein 0.02 OrthoFinder output from all 47 species
Solyc01g099770.3.1 Solyc01g099770 Translationally-controlled tumor protein homolog... 0.04 OrthoFinder output from all 47 species
Spa_g00314 TCTP not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018105 Translational_control_tumour_p 57 220
No external refs found!