Len_g37628 (SHP2, AGL5)

Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g37628

Target	Alias	Description	ECC score	Gene Family Method
Ceric.14G063000.1	AGL65, Ceric.14G063000	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000944.9	AGL15	RNA biosynthesis.transcriptional activation.MADS box...	0.01	OrthoFinder output from all 47 species
LOC_Os01g69850.1	AGL79, LOC_Os01g69850	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os02g49840.1	AGL16, LOC_Os02g49840	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os11g43740.1	AGL65, LOC_Os11g43740	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_6042439g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Pnu_g29613	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	69	116

External Links

No external refs found!