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  5. Len_g37557

Len_g37557


Description : RNA editing factor *(POCO) & original description: none


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g37557

Target Alias Description ECC score Gene Family Method Actions
AT1G15480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
GSVIVT01020534001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g17320.1 PPR596, LOC_Os01g17320 RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.08 OrthoFinder output from all 47 species
LOC_Os04g46010.1 LOC_Os04g46010 Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.06 OrthoFinder output from all 47 species
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
Msp_g31351 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo412643 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.04 OrthoFinder output from all 47 species
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.04 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e007372_P001 Zm00001e007372 Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR033443 PPR_long 546 701
IPR002885 Pentatricopeptide_repeat 383 441
IPR002885 Pentatricopeptide_repeat 470 496
No external refs found!