AT4G17880

Description : Basic helix-loop-helix (bHLH) DNA-binding family protein

Gene families : OG_01_0000688 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000688_tree ,
OG_02_0000488 (LandPlants) Phylogenetic Tree(s): OG_02_0000488_tree ,
OG_03_0001395 (SeedPlants) Phylogenetic Tree(s): OG_03_0001395_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G17880
Cluster	HCCA: Cluster_255

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00099p00127980	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01000771001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01019659001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01027412001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
Gb_36294	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g50940.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os10g42430.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc01g096050.4.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc05g050560.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc08g076930.1.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc08g083170.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
AMTR_s00099p00127980	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	LandPlants
AMTR_s00121p00026620	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	LandPlants
GSVIVT01000771001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	LandPlants
GSVIVT01027412001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	LandPlants
Gb_36294	No alias	transcription factor (bHLH)	0.02	LandPlants
LOC_Os01g50940.1	No alias	transcription factor (bHLH)	0.02	LandPlants
LOC_Os10g42430.1	No alias	transcription factor (bHLH)	0.02	LandPlants
Solyc01g096050.4.1	No alias	transcription factor (bHLH)	0.04	LandPlants
Solyc08g076930.1.1	No alias	transcription factor (bHLH)	0.03	LandPlants
Solyc08g083170.1.1	No alias	transcription factor (bHLH)	0.02	LandPlants
Zm00001e037785_P002	No alias	transcription factor (bHLH)	0.02	LandPlants
AMTR_s00121p00026620	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	SeedPlants
GSVIVT01027412001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IMP	Interproscan
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IMP	Interproscan
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043425	bHLH transcription factor binding	IPI	Interproscan
BP	GO:0045893	positive regulation of transcription, DNA-templated	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	416	462
IPR025610	MYC/MYB_N	63	250

External Links

No external refs found!

AT4G17880

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation