AT4G17520


Description : Hyaluronan / mRNA binding family


Gene families : OG_01_0002128 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002128_tree ,
OG_02_0001404 (LandPlants) Phylogenetic Tree(s): OG_02_0001404_tree ,
OG_03_0002073 (SeedPlants) Phylogenetic Tree(s): OG_03_0002073_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17520
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os01g41880.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.07 Archaeplastida
LOC_Os01g52390.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 Archaeplastida
Pp3c1_6130V3.1 No alias Hyaluronan / mRNA binding family 0.02 Archaeplastida
Pp3c2_30970V3.1 No alias Hyaluronan / mRNA binding family 0.02 Archaeplastida
Pp3c7_26560V3.1 No alias Hyaluronan / mRNA binding family 0.06 Archaeplastida
Solyc01g090190.3.1 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e019955_P001 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.05 Archaeplastida
Zm00001e019958_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.06 Archaeplastida
Zm00001e026661_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.07 Archaeplastida
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.04 LandPlants
LOC_Os01g41880.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.07 LandPlants
LOC_Os01g52390.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 LandPlants
Pp3c1_6130V3.1 No alias Hyaluronan / mRNA binding family 0.02 LandPlants
Pp3c2_30970V3.1 No alias Hyaluronan / mRNA binding family 0.02 LandPlants
Pp3c7_26560V3.1 No alias Hyaluronan / mRNA binding family 0.06 LandPlants
Smo444118 No alias No description available 0.02 LandPlants
Solyc01g090190.3.1 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.04 LandPlants
Zm00001e019955_P001 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.05 LandPlants
Zm00001e019958_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.06 LandPlants
Zm00001e026661_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.07 LandPlants
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.04 SeedPlants
LOC_Os01g41880.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.07 SeedPlants
LOC_Os01g52390.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 SeedPlants
Solyc01g090190.3.1 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.04 SeedPlants
Zm00001e019955_P001 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.05 SeedPlants
Zm00001e019958_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.06 SeedPlants
Zm00001e026661_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005777 peroxisome IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0009735 response to cytokinin IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 136 242
IPR019084 Stm1-like_N 1 63
No external refs found!