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  5. Len_g36051

Len_g36051 (UBP1B)


Aliases : UBP1B

Description : stress granule assembly factor *(UBP1) & original description: none


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g36051

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0743.g084783 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.24G074900.1 Ceric.24G074900 stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g21263 No alias stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Msp_g16815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g19745 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g21422 UBP1B stress granule assembly factor *(UBP1) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 219 289
IPR000504 RRM_dom 327 392
IPR000504 RRM_dom 135 200
No external refs found!