Len_g35774 (TOP1BETA, TOP1)


Aliases : TOP1BETA, TOP1

Description : DNA topoisomerase *(TOP1) & original description: none


Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g35774

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00193620 MGO1, TOP1,... Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.04 OrthoFinder output from all 47 species
AT5G55300 MGO1, TOP1, TOP1ALPHA DNA topoisomerase I alpha 0.04 OrthoFinder output from all 47 species
Als_g18516 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13391 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39560.t1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G062200.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.22G051300.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.06 OrthoFinder output from all 47 species
Ehy_g12929 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020301001 MGO1, TOP1, TOP1ALPHA Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.04 OrthoFinder output from all 47 species
Mp6g05370.1 TOP1BETA, TOP1 DNA topoisomerase (TOP1) 0.05 OrthoFinder output from all 47 species
Msp_g35484 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05911 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g18323 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR025834 TopoI_C_dom 629 698
IPR013500 TopoI_cat_euk 370 594
IPR008336 TopoI_DNA-bd_euk 156 367
No external refs found!