AT4G16310 (LDL3)

Aliases : LDL3

Description : LSD1-like 3

Gene families : OG_01_0004598 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004598_tree ,
OG_02_0003372 (LandPlants) Phylogenetic Tree(s): OG_02_0003372_tree ,
OG_03_0004545 (SeedPlants) Phylogenetic Tree(s): OG_03_0004545_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G16310
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00182p00016710	evm_27.TU.AmTr_v1...	Chromatin organisation.histone modifications.histone...	0.06	Archaeplastida
GSVIVT01009833001	No alias	Lysine-specific histone demethylase 1 homolog 3...	0.11	Archaeplastida
GSVIVT01009834001	No alias	Lysine-specific histone demethylase 1 homolog 3...	0.21	Archaeplastida
Gb_40614	No alias	lysine-specific demethylase (LDL3)	0.2	Archaeplastida
LOC_Os10g38850.1	No alias	lysine-specific demethylase (LDL3)	0.05	Archaeplastida
MA_120420g0010	No alias	no hits & (original description: none)	0.09	Archaeplastida
MA_120420g0020	No alias	lysine-specific demethylase (LDL3)	0.22	Archaeplastida
MA_7050228g0010	No alias	Lysine-specific histone demethylase 1 homolog 3...	0.03	Archaeplastida
Pp3c1_1170V3.1	No alias	LSD1-like 3	0.13	Archaeplastida
Pp3c1_6380V3.1	No alias	LSD1-like 3	0.13	Archaeplastida
Pp3c2_35420V3.1	No alias	LSD1-like 3	0.07	Archaeplastida
Pp3c2_35433V3.1	No alias	LSD1-like 3	0.04	Archaeplastida
Smo405878	No alias	Chromatin organisation.histone modifications.histone...	0.13	Archaeplastida
Solyc04g081100.3.1	No alias	lysine-specific demethylase (LDL3)	0.12	Archaeplastida
Zm00001e002184_P001	No alias	lysine-specific demethylase (LDL3)	0.12	Archaeplastida
AMTR_s00182p00016710	evm_27.TU.AmTr_v1...	Chromatin organisation.histone modifications.histone...	0.06	LandPlants
GSVIVT01009833001	No alias	Lysine-specific histone demethylase 1 homolog 3...	0.09	LandPlants
GSVIVT01009834001	No alias	Lysine-specific histone demethylase 1 homolog 3...	0.2	LandPlants
Gb_40614	No alias	lysine-specific demethylase (LDL3)	0.19	LandPlants
LOC_Os10g38850.1	No alias	lysine-specific demethylase (LDL3)	0.04	LandPlants
MA_120420g0010	No alias	no hits & (original description: none)	0.06	LandPlants
MA_120420g0020	No alias	lysine-specific demethylase (LDL3)	0.17	LandPlants
Pp3c1_1170V3.1	No alias	LSD1-like 3	0.11	LandPlants
Pp3c1_6380V3.1	No alias	LSD1-like 3	0.12	LandPlants
Pp3c2_35420V3.1	No alias	LSD1-like 3	0.05	LandPlants
Pp3c2_35433V3.1	No alias	LSD1-like 3	0.03	LandPlants
Smo405878	No alias	Chromatin organisation.histone modifications.histone...	0.11	LandPlants
Solyc04g081100.3.1	No alias	lysine-specific demethylase (LDL3)	0.12	LandPlants
Zm00001e002184_P001	No alias	lysine-specific demethylase (LDL3)	0.11	LandPlants
AMTR_s00182p00016710	evm_27.TU.AmTr_v1...	Chromatin organisation.histone modifications.histone...	0.06	SeedPlants
GSVIVT01009833001	No alias	Lysine-specific histone demethylase 1 homolog 3...	0.09	SeedPlants
Gb_40614	No alias	lysine-specific demethylase (LDL3)	0.19	SeedPlants
LOC_Os10g38850.1	No alias	lysine-specific demethylase (LDL3)	0.04	SeedPlants
MA_120420g0010	No alias	no hits & (original description: none)	0.05	SeedPlants
MA_120420g0020	No alias	lysine-specific demethylase (LDL3)	0.16	SeedPlants
Solyc04g081100.3.1	No alias	lysine-specific demethylase (LDL3)	0.11	SeedPlants
Zm00001e002184_P001	No alias	lysine-specific demethylase (LDL3)	0.11	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
MF	GO:0008131	primary amine oxidase activity	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	None	Extended
BP	GO:0009850	auxin metabolic process	None	Extended
BP	GO:0009851	auxin biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010229	inflorescence development	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	None	Extended
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0048366	leaf development	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048825	cotyledon development	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007526	SWIRM	388	468
IPR002937	Amino_oxidase	628	1102

External Links

No external refs found!

AT4G16310 (LDL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation