AT4G15950 (NRPD4, RDM2, NRPE4)

Aliases : NRPD4, RDM2, NRPE4

Description : RNA polymerase II, Rpb4, core protein

Gene families : OG_01_0002618 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002618_tree ,
OG_02_0002545 (LandPlants) Phylogenetic Tree(s): OG_02_0002545_tree ,
OG_03_0002264 (SeedPlants) Phylogenetic Tree(s): OG_03_0002264_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G15950
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01003467001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
LOC_Os02g49150.2	No alias	subunit 4 of RNA polymerase	0.04	Archaeplastida
LOC_Os02g49150.2	No alias	subunit 4 of RNA polymerase	0.02	LandPlants
Zm00001e023396_P002	No alias	no hits & (original description: none)	0.02	LandPlants
GSVIVT01003467001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	SeedPlants
LOC_Os02g49150.2	No alias	subunit 4 of RNA polymerase	0.02	SeedPlants
Zm00001e023396_P002	No alias	no hits & (original description: none)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000418	RNA polymerase IV complex	IPI	Interproscan
CC	GO:0000419	RNA polymerase V complex	IPI	Interproscan
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010426	DNA methylation on cytosine within a CHH sequence	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016246	RNA interference	IMP	Interproscan
BP	GO:0016441	posttranscriptional gene silencing	None	Extended
BP	GO:0016458	gene silencing	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022403	cell cycle phase	None	Extended
BP	GO:0030422	production of siRNA involved in RNA interference	IGI	Interproscan
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031050	dsRNA processing	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032776	DNA methylation on cytosine	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035194	post-transcriptional gene silencing by RNA	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0044848	biological phase	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0051325	interphase	IDA	Interproscan
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

External Links

No external refs found!

AT4G15950 (NRPD4, RDM2, NRPE4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation