Smo146605 (PACid_15403332)

Aliases : PACid_15403332

Description : 27.1 RNA.processing SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein FUNCTIONS IN: RNA binding INVOLVED IN: RNA processing EXPRESSED IN: 24 plant structures EXPRESSED DURING: 14 growth stages CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955) BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1) Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12 Bacteria - 1396 Metazoa - 17338 Fungi - 3422 Plants - 5037 Viruses - 0 Other Eukaryotes - 2996 (source: NCBI BLink). & (loc_os02g14780.2 : 459.0

Gene families : OG_01_0003922 (Gene family) Phylogenetic Tree(s): OG0003922_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Smo146605
Cluster HCCA cluster: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Cre06.g307450 No alias 27.1 RNA.processing SWAP... 0.02 Gene family
LOC_Os02g14780 Os02g0245000 27.1 RNA.processing SWAP... 0.03 Gene family
MA_10432431g0010 No alias 27.1 RNA.processing SWAP... 0.04 Gene family
Solyc02g081960.3.1 Solyc02g081960.3 27.1 RNA.processing SWAP... 0.01 Gene family
Zm00001d008293 GRMZM2G028156 27.1 RNA.processing SWAP... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 675 729
No external refs found!