Smo145246 (PACid_15419842)


Aliases : PACid_15419842

Description : 29.2.1.2.1.23 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S23 Ribosomal protein S12/S23 family protein FUNCTIONS IN: structural constituent of ribosome INVOLVED IN: translation LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome EXPRESSED IN: guard cell, leaf CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340) BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT3G09680.1) Has 9074 Blast hits to 9071 proteins in 3107 species: Archae - 259 Bacteria - 5125 Metazoa - 487 Fungi - 294 Plants - 977 Viruses - 0 Other Eukaryotes - 1932 (source: NCBI BLink). & (chl4|512935 : 255.0


Gene families : OG_01_0001694 (Gene family) Phylogenetic Tree(s): OG0001694_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo145246
Cluster HCCA cluster: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT5G02960 No alias Ribosomal protein S12/S23 family protein 0.11 Gene family
Cpa|evm.model.tig00001264.27 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.08 Gene family
Cre12.g504200 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.14 Gene family
GSVIVT01016341001 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.08 Gene family
GSVIVT01025120001 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.08 Gene family
GSVIVT01025626001 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.04 Gene family
LOC_Os03g60400 Os03g0818400 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.08 Gene family
MA_10436470g0020 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.03 Gene family
Solyc10g084310.2.1 Solyc10g084310.2 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.08 Gene family
Zm00001d010566 GRMZM2G163561 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.07 Gene family
Zm00001d012978 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.09 Gene family
Zm00001d034628 No alias 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.09 Gene family
Zm00001d042966 GRMZM2G084465 29.2.1.2.1.23 protein.synthesis.ribosomal... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 30 141
No external refs found!