Smo143857 (PACid_15418621)


Aliases : PACid_15418621

Description : 10.7 cell wall.modification member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. EXP3 INVOLVED IN: in 6 processes LOCATED IN: endomembrane system, extracellular region EXPRESSED IN: 21 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117) BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1) Has 2147 Blast hits to 2144 proteins in 153 species: Archae - 0 Bacteria - 2 Metazoa - 0 Fungi - 34 Plants - 2079 Viruses - 0 Other Eukaryotes - 32 (source: NCBI BLink). & (q40636|expa2_orysa : 315.0


Gene families : OG_01_0000017 (Gene family) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo143857
Cluster HCCA cluster: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.04 Gene family
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.02 Gene family
AT1G62980 EXPA18, EXP18,... expansin A18 0.05 Gene family
AT2G40610 EXPA8, ATHEXP... expansin A8 0.03 Gene family
AT5G39260 EXPA21, EXP21,... expansin A21 0.02 Gene family
AT5G39310 EXPA24, ATEXP24,... expansin A24 0.02 Gene family
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.02 Gene family
GSVIVT01024572001 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
GSVIVT01025509001 No alias 10.7 cell wall.modification Encodes an expansin. Naming... 0.02 Gene family
GSVIVT01028474001 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.04 Gene family
GSVIVT01032935001 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os01g14650 Os01g0248900 10.7 cell wall.modification Member of Alpha-Expansin... 0.02 Gene family
LOC_Os01g14660 Os01g0249100 10.7 cell wall.modification member of Alpha-Expansin... 0.05 Gene family
LOC_Os01g60770 Os01g0823100 10.7 cell wall.modification Member of Alpha-Expansin... 0.01 Gene family
LOC_Os02g16730 Os02g0267200 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os02g16780 Os02g0267700 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os03g06010 Os03g0155500 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os03g06020 Os03g0155700 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os03g06050 Os03g0156000 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
LOC_Os03g06060 Os03g0156300 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
LOC_Os03g31480 Os03g0428700 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
LOC_Os04g15840 Os04g0228400 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
LOC_Os05g19600 Os05g0277000 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os05g39990 Os05g0477600 10.7 cell wall.modification Member of Alpha-Expansin... 0.02 Gene family
LOC_Os06g41700 Os06g0621900 10.7 cell wall.modification expansin -like protein.... 0.02 Gene family
LOC_Os08g44790 Os08g0561900 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
LOC_Os10g30330 Os10g0439100 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
LOC_Os10g30340 Os10g0439200 10.7 cell wall.modification member of Alpha-Expansin... 0.04 Gene family
LOC_Os10g39110 Os10g0535900 10.7 cell wall.modification Member of Alpha-Expansin... 0.03 Gene family
MA_130258g0010 No alias 10.7 cell wall.modification Member of Alpha-Expansin... 0.01 Gene family
MA_178775g0020 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
MA_18265g0010 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
MA_184474g0010 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
MA_35592g0020 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
MA_792493g0010 No alias 10.7 cell wall.modification Member of Alpha-Expansin... 0.01 Gene family
MA_915221g0010 No alias 10.7 cell wall.modification Member of Alpha-Expansin... 0.02 Gene family
Smo174522 PACid_15418434 10.7 cell wall.modification Encodes an expansin. Naming... 0.02 Gene family
Smo78615 PACid_15422897 10.7 cell wall.modification Member of Alpha-Expansin... 0.03 Gene family
Solyc05g052245.1.1 Solyc05g052245.1 10.7 cell wall.modification member of Alpha-Expansin... 0.04 Gene family
Solyc06g051800.3.1 Solyc06g051800.3 10.7 cell wall.modification putative expansin. Naming... 0.02 Gene family
Solyc08g080060.3.1 Solyc08g080060.3 10.7 cell wall.modification Member of Alpha-Expansin... 0.03 Gene family
Solyc09g010860.3.1 Solyc09g010860.3 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Solyc12g089380.2.1 Solyc12g089380.2 10.7 cell wall.modification member of Alpha-Expansin... 0.04 Gene family
Zm00001d016022 GRMZM2G146540 10.7 cell wall.modification member of Alpha-Expansin... 0.04 Gene family
Zm00001d016054 GRMZM2G359799 10.7 cell wall.modification Member of Alpha-Expansin... 0.03 Gene family
Zm00001d018031 GRMZM2G105844 10.7 cell wall.modification Member of Alpha-Expansin... 0.02 Gene family
Zm00001d027717 GRMZM2G173826 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d027718 GRMZM2G073373 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d031906 GRMZM2G030531 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d031907 GRMZM2G106899 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
Zm00001d032876 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d032881 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
Zm00001d032882 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
Zm00001d032886 GRMZM2G414779 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
Zm00001d034663 GRMZM2G368886 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d035108 GRMZM2G450546 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d035111 GRMZM2G064174 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
Zm00001d035112 GRMZM2G019398 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d040247 GRMZM2G094523 10.7 cell wall.modification Member of Alpha-Expansin... 0.02 Gene family
Zm00001d040249 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d043047 GRMZM2G339122 10.7 cell wall.modification Member of Alpha-Expansin... 0.01 Gene family
Zm00001d047353 GRMZM2G127029 10.7 cell wall.modification Member of Alpha-Expansin... 0.03 Gene family
Zm00001d048418 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.05 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 62 147
No external refs found!