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  5. AT4G13210

AT4G13210


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000134 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000134_tree ,
OG_02_0000111 (LandPlants) Phylogenetic Tree(s): OG_02_0000111_tree ,
OG_03_0000097 (SeedPlants) Phylogenetic Tree(s): OG_03_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G13210
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.04 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Gb_19802 No alias pectate lyase 0.04 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10332686g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10353668g0010 No alias pectate lyase 0.03 Archaeplastida
MA_103716g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.02 Archaeplastida
MA_163033g0010 No alias pectate lyase 0.02 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.04 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.04 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_62112g0010 No alias pectate lyase 0.03 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.05 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.03 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.02 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.04 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c2_9460V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc09g061890.3.1 No alias pectate lyase 0.06 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.04 LandPlants
AT3G27400 No alias Pectin lyase-like superfamily protein 0.04 LandPlants
AT4G22080 RHS14 root hair specific 14 0.03 LandPlants
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 LandPlants
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 LandPlants
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 LandPlants
MA_101171g0010 No alias pectate lyase 0.02 LandPlants
MA_10353668g0010 No alias pectate lyase 0.03 LandPlants
MA_103716g0010 No alias pectate lyase 0.02 LandPlants
MA_10426822g0020 No alias pectate lyase 0.02 LandPlants
MA_203992g0010 No alias pectate lyase 0.03 LandPlants
MA_476625g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_66914g0010 No alias pectate lyase 0.02 LandPlants
MA_97947g0010 No alias pectate lyase 0.02 LandPlants
Pp3c2_9460V3.1 No alias Pectate lyase family protein 0.02 LandPlants
Solyc09g061890.3.1 No alias pectate lyase 0.03 LandPlants
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 SeedPlants
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 SeedPlants
MA_10353668g0010 No alias pectate lyase 0.03 SeedPlants
MA_203992g0010 No alias pectate lyase 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0010089 xylem development RCA Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
BP GO:0044036 cell wall macromolecule metabolic process RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 139 318
No external refs found!