Len_g31733

Description : TruB-type tRNA pseudouridine synthase & original description: none

Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g31733
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00225390	evm_27.TU.AmTr_v1...	RNA processing.RNA...	0.04	OrthoFinder output from all 47 species
AT5G14460	No alias	Pseudouridine synthase family protein	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031272	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Cba_g23041	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ceric.07G028400.1	Ceric.07G028400	TruB-type tRNA pseudouridine synthase & original...	0.05	OrthoFinder output from all 47 species
Dac_g11405	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Dcu_g21012	No alias	TruB-type tRNA pseudouridine synthase & original...	0.07	OrthoFinder output from all 47 species
GSVIVT01032383001	No alias	RNA processing.RNA...	0.05	OrthoFinder output from all 47 species
Msp_g15883	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Ore_g25312	No alias	TruB-type tRNA pseudouridine synthase & original...	0.06	OrthoFinder output from all 47 species
Ore_g35846	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Sam_g26745	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Smo75554	No alias	RNA processing.RNA...	0.05	OrthoFinder output from all 47 species
Solyc02g093460.4.1	Solyc02g093460	tRNA pseudouridine synthase (TruB)	0.02	OrthoFinder output from all 47 species
Spa_g51764	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Zm00001e029672_P001	Zm00001e029672	tRNA pseudouridine synthase (TruB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002501	PsdUridine_synth_N	325	475
IPR032819	TruB_C	476	519

External Links

No external refs found!

Len_g31733

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation