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  5. Len_g31360

Len_g31360


Description : snRNP-associated protein *(SR140) & original description: none


Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g31360

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00173090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Adi_g011558 No alias snRNP-associated protein *(SR140) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g42378 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21519 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g01031 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04985 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01035985001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Gb_18824 No alias snRNP-associated protein (SR140) 0.03 OrthoFinder output from all 47 species
Lfl_g11150 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g09321 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02308 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08483 No alias snRNP-associated protein *(SR140) & original description: none 0.07 OrthoFinder output from all 47 species
Solyc03g025280.4.1 Solyc03g025280 snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species
Spa_g12506 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e013823_P001 Zm00001e013823 snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR013170 mRNA_splic_Cwf21_dom 850 896
IPR000504 RRM_dom 205 276
IPR000061 Surp 352 404
IPR006569 CID_dom 472 600
No external refs found!