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  5. Len_g31358

Len_g31358


Description : deadenylase component *(CCR4) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0002208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002208_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Len_g31358

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00239870 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Aop_g02918 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Cba_g12612 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019407 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Solyc03g059010.4.1 Solyc03g059010 deadenylase component CCR4 of CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Spa_g18132 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031615 Zfn-C6H2 71 109
IPR005135 Endo/exonuclease/phosphatase 250 579
No external refs found!