AT4G12740

Description : HhH-GPD base excision DNA repair family protein

Gene families : OG_01_0004613 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004613_tree ,
OG_02_0006325 (LandPlants) Phylogenetic Tree(s): OG_02_0006325_tree ,
OG_03_0006008 (SeedPlants) Phylogenetic Tree(s): OG_03_0006008_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G12740
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00103210	evm_27.TU.AmTr_v1...	Adenine DNA glycosylase OS=Arabidopsis thaliana	0.04	Archaeplastida
Cre02.g082000	No alias	Adenine DNA glycosylase OS=Arabidopsis thaliana	0.02	Archaeplastida
MA_10021431g0010	No alias	No annotation	0.03	Archaeplastida
MA_10433401g0010	No alias	Adenine DNA glycosylase OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc09g018850.3.1	No alias	Adenine DNA glycosylase OS=Arabidopsis thaliana...	0.05	Archaeplastida
Zm00001e039781_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
AMTR_s00066p00103210	evm_27.TU.AmTr_v1...	Adenine DNA glycosylase OS=Arabidopsis thaliana	0.04	LandPlants
MA_10433401g0010	No alias	Adenine DNA glycosylase OS=Arabidopsis thaliana...	0.03	LandPlants
Solyc09g018850.3.1	No alias	Adenine DNA glycosylase OS=Arabidopsis thaliana...	0.05	LandPlants
Zm00001e039781_P001	No alias	no hits & (original description: none)	0.04	LandPlants
AMTR_s00066p00103210	evm_27.TU.AmTr_v1...	Adenine DNA glycosylase OS=Arabidopsis thaliana	0.04	SeedPlants
MA_10433401g0010	No alias	Adenine DNA glycosylase OS=Arabidopsis thaliana...	0.03	SeedPlants
Solyc09g018850.3.1	No alias	Adenine DNA glycosylase OS=Arabidopsis thaliana...	0.04	SeedPlants
Zm00001e039781_P001	No alias	no hits & (original description: none)	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	ISS	Interproscan
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR029119	MutY_C	403	529
IPR003265	HhH-GPD_domain	166	317

External Links

No external refs found!

AT4G12740

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation