Len_g30980

Description : component *(uL18c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0005910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005910_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g30980
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00209880	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from all 47 species
AT1G48350	No alias	Ribosomal L18p/L5e family protein	0.12	OrthoFinder output from all 47 species
Adi_g001890	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g28610	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g00187	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g20657	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cba_g10879	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.13G022200.1	Ceric.13G022200	component *(uL18c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Cre01.g052100	No alias	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
Dac_g05557	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g21381	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g31625	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Dde_g24129	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g02012	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01017720001	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_12756	No alias	component psRPL18 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
LOC_Os03g61260.1	LOC_Os03g61260	component psRPL18 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Lfl_g00332	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
MA_7609850g0010	No alias	50S ribosomal protein L18, chloroplastic OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Mp6g08500.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.19	OrthoFinder output from all 47 species
Msp_g22178	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Nbi_g15098	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ore_g07265	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ppi_g02809	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017759	No alias	EC_3.2 glycosylase & original description: CDS=437-952	0.09	OrthoFinder output from all 47 species
Sam_g19670	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g45370	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Smo143891	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Solyc12g098890.2.1	Solyc12g098890	component psRPL18 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Spa_g00581	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Tin_g00498	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Zm00001e006246_P001	Zm00001e006246	component psRPL18 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005484	Ribosomal_L18	78	179

External Links

No external refs found!

Len_g30980

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation