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  5. Len_g30946

Len_g30946 (PSBW)


Aliases : PSBW

Description : component *(PsbW) of PS-II complex & original description: none


Gene families : OG0002050 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g30946
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266120 PSBW,... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 OrthoFinder output from all 47 species
AT2G30570 PSBW photosystem II reaction center W 0.04 OrthoFinder output from all 47 species
Aev_g47226 MAC3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04986 No alias component *(PsbW) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Als_g12837 PSBW component *(PsbW) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Als_g56334 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32667 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g41217 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0036.g025757 PSBW component *(PsbW) of PS-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G036500.1 PSBW, Ceric.06G036500 component *(PsbW) of PS-II complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.32G066400.1 PSBW, Ceric.32G066400 component *(PsbW) of PS-II complex & original... 0.05 OrthoFinder output from all 47 species
Dcu_g18523 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01886 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04368 PSBW component *(PsbW) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000743001 PSBW Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.02 OrthoFinder output from all 47 species
GSVIVT01036277001 PSBW Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 OrthoFinder output from all 47 species
LOC_Os01g56680.2 PSBW, LOC_Os01g56680 component PsbW of PS-II complex 0.04 OrthoFinder output from all 47 species
Lfl_g03716 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17242 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431532g0010 PSBW component PsbW of PS-II complex 0.02 OrthoFinder output from all 47 species
Mp5g14190.1 PSBW component PsbW of PS-II complex 0.03 OrthoFinder output from all 47 species
Msp_g20237 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44518 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23251 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019011 PSBW component *(PsbW) of PS-II complex & original... 0.02 OrthoFinder output from all 47 species
Sam_g39267 No alias component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g084050.4.1 PSBW, Solyc06g084050 component PsbW of PS-II complex 0.05 OrthoFinder output from all 47 species
Spa_g52574 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24382 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g24383 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e019660_P002 PSBW, Zm00001e019660 component PsbW of PS-II complex 0.03 OrthoFinder output from all 47 species
Zm00001e027386_P002 PSBW, Zm00001e027386 component PsbW of PS-II complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR009806 PSII_PsbW_class2 34 141
No external refs found!