Len_g30936 (XPB1, ATXPB1)

Aliases : XPB1, ATXPB1

Description : component *(SSL2/XPB) of TFIIh basal transcription factor complex & original description: none

Gene families : OG0003291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003291_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g30936

Target	Alias	Description	ECC score	Gene Family Method
AT5G41370	XPB1, ATXPB1	homolog of xeroderma pigmentosum complementation group B 1	0.03	OrthoFinder output from all 47 species
Aop_g12844	XPB1, ATXPB1	component *(SSL2/XPB) of TFIIh basal transcription...	0.03	OrthoFinder output from all 47 species
Cba_g38168	XPB1, ATXPB1	component *(SSL2/XPB) of TFIIh basal transcription...	0.04	OrthoFinder output from all 47 species
Pir_g08305	XPB1, ATXPB1	component *(SSL2/XPB) of TFIIh basal transcription...	0.03	OrthoFinder output from all 47 species
Spa_g00759	XPB1, ATXPB1	component *(SSL2/XPB) of TFIIh basal transcription...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032438	ERCC3_RAD25_C	494	743
IPR032830	XPB/Ssl2_N	93	216
IPR006935	Helicase/UvrB_N	312	468

External Links

No external refs found!