AMTR_s00012p00087690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.41

Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0010963 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010963_tree ,
OG_02_0010911 (LandPlants) Phylogenetic Tree(s): OG_02_0010911_tree ,
OG_03_0010842 (SeedPlants) Phylogenetic Tree(s): OG_03_0010842_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00087690
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 Archaeplastida
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.06 Archaeplastida
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 Archaeplastida
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 Archaeplastida
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 LandPlants
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.05 LandPlants
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 LandPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 LandPlants
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 SeedPlants
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.05 SeedPlants
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 SeedPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 182 208
IPR002885 Pentatricopeptide_repeat 669 714
IPR002885 Pentatricopeptide_repeat 353 399
IPR002885 Pentatricopeptide_repeat 526 574
IPR002885 Pentatricopeptide_repeat 245 292
IPR002885 Pentatricopeptide_repeat 455 504
IPR002885 Pentatricopeptide_repeat 598 644
IPR002885 Pentatricopeptide_repeat 315 343
IPR002885 Pentatricopeptide_repeat 416 444
No external refs found!