Len_g30745 (AtLIG6, LIG6)


Aliases : AtLIG6, LIG6

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g30745

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00073450 AtLIG6, LIG6,... DNA damage response.DNA repair mechanisms.nonhomologous... 0.03 OrthoFinder output from all 47 species
AT1G08130 ATLIG1, LIG1 DNA ligase 1 0.02 OrthoFinder output from all 47 species
Aev_g01376 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031470001 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.05 OrthoFinder output from all 47 species
LOC_Os10g34750.1 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.02 OrthoFinder output from all 47 species
Ore_g44192 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Ppi_g48452 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Tin_g13706 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012308 DNA_ligase_ATP-dep_N 923 1099
IPR012310 DNA_ligase_ATP-dep_cent 1166 1386
IPR011084 DRMBL 382 487
IPR012309 DNA_ligase_ATP-dep_C 1412 1521
No external refs found!