Len_g30354

Description : sRNA cargo-loading helicase *(RH11/37) of extracellular vesicle trafficking & original description: none

Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g30354

Target	Alias	Description	ECC score	Gene Family Method
Als_g46511	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Aob_g38356	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
Ceric.08G007800.1	Ceric.08G007800	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
Ceric.23G085300.1	Ceric.23G085300	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020553.196	No alias	DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
GSVIVT01001348001	No alias	DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
MA_137324g0010	No alias	DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Sam_g15279	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Smo267628	No alias	DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Solyc01g005960.3.1	Solyc01g005960	DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Tin_g14052	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	449	543
IPR011545	DEAD/DEAH_box_helicase_dom	209	390

External Links

No external refs found!