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  5. Len_g29725

Len_g29725


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g29725

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00152p00054630 RHA2A,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G24580 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G49200 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G17600 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G43420 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g076180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0179.g056226 ATL4H not classified & original description: CDS=1-969 0.04 OrthoFinder output from all 47 species
Ceric.38G004700.1 Ceric.38G004700 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g06871 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
GSVIVT01024698001 ATL2, TL2 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01036593001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g15060.1 LOC_Os02g15060 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g15080.1 LOC_Os02g15080 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g15100.1 ATL2, TL2, LOC_Os02g15100 RING-H2 finger protein ATL40 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g16970.1 LOC_Os04g16970 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g36310.1 LOC_Os05g36310 RING-H2 finger protein ATL77 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os06g07100.2 LOC_Os06g07100 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os08g34550.1 LOC_Os08g34550 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os08g38460.1 XERICO, LOC_Os08g38460 ubiquitin protein ligase (XERICO) 0.03 OrthoFinder output from all 47 species
LOC_Os09g30160.1 XERICO, LOC_Os09g30160 ubiquitin protein ligase (XERICO) 0.03 OrthoFinder output from all 47 species
LOC_Os12g40460.1 LOC_Os12g40460 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_105610g0010 RHA3A no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_391590g0010 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9515738g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Mp4g04600.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g47443 RHA3A RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g41609 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g32844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023284 No alias not classified & original description: CDS=1-567 0.03 OrthoFinder output from all 47 species
Spa_g10479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008560_P001 RHA2A, Zm00001e008560 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029032_P001 Zm00001e029032 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 147 190
No external refs found!