AT4G11130 (SMD1, RDR2)


Aliases : SMD1, RDR2

Description : RNA-dependent RNA polymerase 2


Gene families : OG_01_0000823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000823_tree ,
OG_02_0002293 (LandPlants) Phylogenetic Tree(s): OG_02_0002293_tree ,
OG_03_0008689 (SeedPlants) Phylogenetic Tree(s): OG_03_0008689_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G11130
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00026960 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase 0.03 Archaeplastida
MA_10436273g0010 No alias RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_467439g0010 No alias RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc04g014870.3.1 No alias ssRNA polymerase (RDR6) 0.07 Archaeplastida
AMTR_s00088p00026960 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase 0.03 LandPlants
Gb_28433 No alias ssRNA polymerase (RDR2) 0.02 LandPlants
MA_10436273g0010 No alias RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.03 LandPlants
GSVIVT01007792001 No alias RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase 0.02 SeedPlants
MA_10436273g0010 No alias RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006342 chromatin silencing RCA Interproscan
BP GO:0006346 DNA methylation-dependent heterochromatin assembly RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0007267 cell-cell signaling IMP Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0009616 RNAi-mediated antiviral immune response RCA Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0010495 long-distance posttranscriptional gene silencing IMP Interproscan
BP GO:0016246 RNA interference IMP Interproscan
BP GO:0016246 RNA interference RCA Interproscan
BP GO:0016441 posttranscriptional gene silencing ISS Interproscan
BP GO:0016458 gene silencing IMP Interproscan
BP GO:0016569 covalent chromatin modification RCA Interproscan
BP GO:0030422 production of siRNA involved in RNA interference IMP Interproscan
BP GO:0030422 production of siRNA involved in RNA interference RCA Interproscan
BP GO:0031047 gene silencing by RNA RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0043687 post-translational protein modification RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0050832 defense response to fungus IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 386 964
No external refs found!