AT4G11080


Description : HMG (high mobility group) box protein


Gene families : OG_01_0002362 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002362_tree ,
OG_02_0006706 (LandPlants) Phylogenetic Tree(s): OG_02_0006706_tree ,
OG_03_0006137 (SeedPlants) Phylogenetic Tree(s): OG_03_0006137_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G11080
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00093p00057150 evm_27.TU.AmTr_v1... High mobility group B protein 6 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01019504001 No alias High mobility group B protein 13 OS=Arabidopsis thaliana 0.13 Archaeplastida
Gb_00374 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.09 Archaeplastida
LOC_Os02g15810.1 No alias High mobility group B protein 13 OS=Arabidopsis thaliana... 0.11 Archaeplastida
MA_783123g0010 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Pp3c11_8530V3.1 No alias HMG (high mobility group) box protein 0.08 Archaeplastida
Pp3c7_20570V3.1 No alias HMG (high mobility group) box protein 0.03 Archaeplastida
Smo73858 No alias High mobility group B protein 6 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc08g082070.3.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e014266_P001 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.13 Archaeplastida
AMTR_s00093p00057150 evm_27.TU.AmTr_v1... High mobility group B protein 6 OS=Arabidopsis thaliana 0.08 LandPlants
GSVIVT01019504001 No alias High mobility group B protein 13 OS=Arabidopsis thaliana 0.11 LandPlants
Gb_00374 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.09 LandPlants
LOC_Os02g15810.1 No alias High mobility group B protein 13 OS=Arabidopsis thaliana... 0.09 LandPlants
MA_783123g0010 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.06 LandPlants
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.06 LandPlants
Pp3c11_8530V3.1 No alias HMG (high mobility group) box protein 0.06 LandPlants
Pp3c7_20570V3.1 No alias HMG (high mobility group) box protein 0.02 LandPlants
Smo73858 No alias High mobility group B protein 6 OS=Arabidopsis thaliana 0.02 LandPlants
Solyc08g082070.3.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.03 LandPlants
Zm00001e014266_P001 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.12 LandPlants
AMTR_s00093p00057150 evm_27.TU.AmTr_v1... High mobility group B protein 6 OS=Arabidopsis thaliana 0.09 SeedPlants
GSVIVT01019504001 No alias High mobility group B protein 13 OS=Arabidopsis thaliana 0.12 SeedPlants
Gb_00374 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.08 SeedPlants
LOC_Os02g15810.1 No alias High mobility group B protein 13 OS=Arabidopsis thaliana... 0.09 SeedPlants
MA_783123g0010 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.06 SeedPlants
Solyc08g082070.3.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.03 SeedPlants
Zm00001e014266_P001 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.13 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000793 condensed chromosome IDA Interproscan
CC GO:0000794 condensed nuclear chromosome IDA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009071 HMG_box_dom 129 191
IPR009071 HMG_box_dom 246 312
IPR009071 HMG_box_dom 372 440
No external refs found!