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  5. Len_g28141

Len_g28141


Description : not classified & original description: none


Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g28141
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Adi_g007716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17279 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Azfi_s0257.g060601 No alias not classified & original description: CDS=200-3178 0.06 OrthoFinder output from all 47 species
Cba_g18567 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.13G022800.1 Ceric.13G022800 not classified & original description: pacid=50636376... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.51 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.01 OrthoFinder output from all 47 species
Dcu_g04126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g32880.1 LOC_Os11g32880 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
Lfl_g05693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006439 No alias not classified & original description: CDS=315-2762 0.04 OrthoFinder output from all 47 species
Smo77276 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
Zm00001e011170_P004 Zm00001e011170 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 331 488
IPR001650 Helicase_C 536 635
IPR003711 CarD-like/TRCF_RID 206 300
No external refs found!