AT4G09730 (RH39)


Aliases : RH39

Description : RH39


Gene families : OG_01_0005822 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005822_tree ,
OG_02_0008168 (LandPlants) Phylogenetic Tree(s): OG_02_0008168_tree ,
OG_03_0009649 (SeedPlants) Phylogenetic Tree(s): OG_03_0009649_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G09730
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 Archaeplastida
Cre01.g033832 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.01 Archaeplastida
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.17 Archaeplastida
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.1 Archaeplastida
MA_10427047g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 Archaeplastida
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 Archaeplastida
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.09 Archaeplastida
Smo86079 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.2 Archaeplastida
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.14 Archaeplastida
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 LandPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.16 LandPlants
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.1 LandPlants
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 LandPlants
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.08 LandPlants
Smo86079 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana 0.03 LandPlants
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.19 LandPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.13 LandPlants
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 SeedPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.16 SeedPlants
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.1 SeedPlants
LOC_Os01g08930.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 SeedPlants
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 SeedPlants
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.18 SeedPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.12 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006399 tRNA metabolic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast IMP Interproscan
BP GO:0009658 chloroplast organization RCA Interproscan
MF GO:0016887 ATPase activity IDA Interproscan
MF GO:0070180 large ribosomal subunit rRNA binding IDA Interproscan
BP GO:0080158 obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis IMP Interproscan
BP GO:1901259 chloroplast rRNA processing IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 354 466
IPR011545 DEAD/DEAH_box_helicase_dom 136 319
No external refs found!