Len_g27953

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g27953

Target	Alias	Description	ECC score	Gene Family Method
AT2G18020	EMB2296	Ribosomal protein L2 family	0.03	OrthoFinder output from all 47 species
AT4G36130	No alias	Ribosomal protein L2 family	0.03	OrthoFinder output from all 47 species
Adi_g047038	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g12168	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cre12.g535851	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dac_g02131	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_219740g0010	No alias	component RPL8 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp7g01860.1	EMB2296	component RPL8 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Msp_g07633	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c12_10200V3.1	EMB2296, Pp3c12_10200	Ribosomal protein L2 family	0.04	OrthoFinder output from all 47 species
Pp3c13_23630V3.1	EMB2296, Pp3c13_23630	Ribosomal protein L2 family	0.04	OrthoFinder output from all 47 species
Pp3c4_12690V3.1	EMB2296, Pp3c4_12690	Ribosomal protein L2 family	0.03	OrthoFinder output from all 47 species
Pp3c4_12720V3.1	EMB2296, Pp3c4_12720	Ribosomal protein L2 family	0.03	OrthoFinder output from all 47 species
Ppi_g33659	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g13695	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g13696	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Solyc12g005330.2.1	Solyc12g005330	component RPL8 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g30832	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g00494	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e002931_P001	EMB2296, Zm00001e002931	component RPL8 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e033350_P001	EMB2296, Zm00001e033350	component RPL8 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	98	225
IPR022666	Rbsml_prot_L2_RNA-bd_dom	14	90

External Links

No external refs found!

Len_g27953

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation