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  5. AMTR_s00012p00035940

AMTR_s00012p00035940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.6

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.ALY/Tho4 mRNA-binding adaptor component


Gene families : OG_01_0001027 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001027_tree ,
OG_02_0000803 (LandPlants) Phylogenetic Tree(s): OG_02_0000803_tree ,
OG_03_0000994 (SeedPlants) Phylogenetic Tree(s): OG_03_0000994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00035940
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01025009001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 Archaeplastida
Gb_18965 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
MA_102122g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc10g086400.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.05 Archaeplastida
Solyc11g011130.3.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 Archaeplastida
Solyc11g073280.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Zm00001e009369_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 Archaeplastida
Zm00001e033165_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
GSVIVT01025009001 No alias RNA processing.messenger ribonucleoprotein particle... 0.05 LandPlants
Gb_18965 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 LandPlants
MA_102122g0010 No alias no hits & (original description: none) 0.05 LandPlants
Solyc10g086400.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 LandPlants
Solyc11g073280.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 LandPlants
Zm00001e009369_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 LandPlants
Zm00001e033165_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 LandPlants
GSVIVT01025009001 No alias RNA processing.messenger ribonucleoprotein particle... 0.05 SeedPlants
Gb_18965 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.01 SeedPlants
MA_102122g0010 No alias no hits & (original description: none) 0.04 SeedPlants
Solyc10g086400.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 SeedPlants
Solyc11g073280.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 96 164
IPR025715 FoP_C 201 248
No external refs found!