AT4G08940

Description : Ubiquitin carboxyl-terminal hydrolase family protein

Gene families : OG_01_0001104 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001104_tree ,
OG_02_0010094 (LandPlants) Phylogenetic Tree(s): OG_02_0010094_tree ,
OG_03_0008344 (SeedPlants) Phylogenetic Tree(s): OG_03_0008344_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G08940
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
Gb_34809	No alias	WTF1 plastidial RNA basal splicing factor	0.03	Archaeplastida
Gb_41689	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os09g29760.1	No alias	Protein WHATS THIS FACTOR 1 OS=Zea mays...	0.03	Archaeplastida
Smo422954	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa...	0.05	Archaeplastida
Solyc01g079430.2.1	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis...	0.04	Archaeplastida
Solyc04g074280.1.1	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa...	0.05	Archaeplastida
Zm00001e026570_P001	No alias	WTF1 plastidial RNA basal splicing factor	0.03	Archaeplastida
Gb_41689	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis...	0.02	LandPlants
LOC_Os09g29760.1	No alias	Protein WHATS THIS FACTOR 1 OS=Zea mays...	0.03	LandPlants
Solyc04g074280.1.1	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa...	0.05	LandPlants
Gb_41689	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis...	0.02	SeedPlants
LOC_Os09g29760.1	No alias	Protein WHATS THIS FACTOR 1 OS=Zea mays...	0.03	SeedPlants
Solyc04g074280.1.1	No alias	Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa...	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006865	amino acid transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0015711	organic anion transport	None	Extended
BP	GO:0015804	neutral amino acid transport	None	Extended
BP	GO:0015824	proline transport	RCA	Interproscan
BP	GO:0015849	organic acid transport	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0046942	carboxylic acid transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021099	PORR_domain	67	389

External Links

No external refs found!