Len_g26504 (ATRPS13A, RPS13, PFL2, RPS13A)

Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g26504
Cluster	HCCA: Cluster_147

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00029190	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT3G60770	No alias	Ribosomal protein S13/S15	0.02	OrthoFinder output from all 47 species
AT4G00100	ATRPS13A, RPS13,...	ribosomal protein S13A	0.03	OrthoFinder output from all 47 species
Adi_g074584	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0075.g037655	No alias	not classified & original description: CDS=1-246	0.03	OrthoFinder output from all 47 species
Cre07.g331900	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01027637001	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os07g38540.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os08g02400.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os08g02410.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_141232g0010	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp4g03410.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.03	OrthoFinder output from all 47 species
Pp3c7_26720V3.1	ATRPS13A, RPS13,...	ribosomal protein S13A	0.01	OrthoFinder output from all 47 species
Spa_g56598	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005787	signal peptidase complex	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0030688	preribosome, small subunit precursor	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012606	Ribosomal_S13/S15_N	1	57
IPR000589	Ribosomal_S15	80	143

External Links

No external refs found!

Len_g26504 (ATRPS13A, RPS13, PFL2, RPS13A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation