AMTR_s00011p00266610 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.232

Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF73/Ysh1 component


Gene families : OG_01_0001402 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001402_tree ,
OG_02_0004701 (LandPlants) Phylogenetic Tree(s): OG_02_0004701_tree ,
OG_03_0005331 (SeedPlants) Phylogenetic Tree(s): OG_03_0005331_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00266610
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023351001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
LOC_Os03g63590.1 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
MA_45580g0010 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
MA_8649161g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c6_3520V3.1 No alias cleavage and polyadenylation specificity factor 73-I 0.03 Archaeplastida
Solyc07g049480.3.1 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
Zm00001e006396_P001 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Zm00001e011638_P001 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
MA_45580g0010 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.05 LandPlants
Pp3c6_3520V3.1 No alias cleavage and polyadenylation specificity factor 73-I 0.03 LandPlants
Solyc07g049480.3.1 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.06 LandPlants
Zm00001e006396_P001 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.02 LandPlants
Zm00001e011638_P001 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.02 LandPlants
MA_45580g0010 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.05 SeedPlants
Solyc07g049480.3.1 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.05 SeedPlants
Zm00001e006396_P001 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022712 Beta_Casp 258 379
IPR001279 Metallo-B-lactamas 33 203
IPR021718 CPSF73-100_C 486 690
IPR011108 RMMBL 393 433
No external refs found!