AT4G07410


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0004823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004823_tree ,
OG_02_0004498 (LandPlants) Phylogenetic Tree(s): OG_02_0004498_tree ,
OG_03_0005446 (SeedPlants) Phylogenetic Tree(s): OG_03_0005446_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G07410
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000852.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
Cre13.g606850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
LOC_Os03g52470.1 No alias SSU processome assembly factor (UTP4/PCN) 0.06 Archaeplastida
Mp5g05000.1 No alias SSU processome assembly factor (UTP4/PCN) 0.03 Archaeplastida
Pp3c19_13580V3.1 No alias transducin family protein / WD-40 repeat family protein 0.05 Archaeplastida
Pp3c22_14490V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.05 Archaeplastida
Solyc04g077680.3.1 No alias SSU processome assembly factor (UTP4/PCN) 0.07 Archaeplastida
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.08 Archaeplastida
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.05 Archaeplastida
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 LandPlants
LOC_Os03g52470.1 No alias SSU processome assembly factor (UTP4/PCN) 0.06 LandPlants
Mp5g05000.1 No alias SSU processome assembly factor (UTP4/PCN) 0.02 LandPlants
Pp3c19_13580V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 LandPlants
Pp3c22_14490V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.03 LandPlants
Solyc04g077680.3.1 No alias SSU processome assembly factor (UTP4/PCN) 0.06 LandPlants
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.07 LandPlants
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.04 LandPlants
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 SeedPlants
LOC_Os03g52470.1 No alias SSU processome assembly factor (UTP4/PCN) 0.06 SeedPlants
Solyc04g077680.3.1 No alias SSU processome assembly factor (UTP4/PCN) 0.06 SeedPlants
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.07 SeedPlants
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0010073 meristem maintenance IMP Interproscan
BP GO:0010305 leaf vascular tissue pattern formation IMP Interproscan
BP GO:0010311 lateral root formation IMP Interproscan
BP GO:0010449 root meristem growth IMP Interproscan
BP GO:0035266 meristem growth IMP Interproscan
BP GO:0048366 leaf development IMP Interproscan
BP GO:0048569 post-embryonic animal organ development IGI Interproscan
BP GO:2000012 regulation of auxin polar transport IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 203 226
No external refs found!