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  5. Len_g25840

Len_g25840 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g25840

Target Alias Description ECC score Gene Family Method Actions
Ala_g04363 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene48018.t1 NFD4, HMGB4,... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Ceric.03G026600.1 HMGB6, Ceric.03G026600 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os04g47690.1 NFD03, HMGB3,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g24536 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Mp8g07450.1 NFD03, HMGB3, NFD3 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Nbi_g12748 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g22023 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pp3c11_8530V3.1 Pp3c11_8530 HMG (high mobility group) box protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012915 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Solyc02g082700.3.1 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0) 0.04 OrthoFinder output from all 47 species
Spa_g10432 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Tin_g39912 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013329_P001 NFD2, HMG BETA... DNA-binding protein MNB1B OS=Zea mays... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 90 159
No external refs found!