Smo129201 (PACid_15417070)


Aliases : PACid_15417070

Description : 17.1.2 hormone metabolism.abscisic acid.signal transduction RING/U-box superfamily protein FUNCTIONS IN: zinc ion binding LOCATED IN: nucleus EXPRESSED IN: 22 plant structures EXPRESSED DURING: 15 growth stages CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957) BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1) Has 9587 Blast hits to 9565 proteins in 281 species: Archae - 0 Bacteria - 0 Metazoa - 2561 Fungi - 845 Plants - 4808 Viruses - 65 Other Eukaryotes - 1308 (source: NCBI BLink). & (chl4|514553 : 100.0


Gene families : OG_01_0000020 (Gene family) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo129201
Cluster HCCA cluster: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000571.7 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
GSVIVT01020765001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
LOC_Os05g40980 Os05g0488800 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Solyc02g065650.1.1 Solyc02g065650.1 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 215 257
No external refs found!