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  5. Len_g24856

Len_g24856


Description : substrate adaptor of CUL4-based E3 ubiquitin ligase complex & original description: none


Gene families : OG0004504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004504_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g24856

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00017150 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AMTR_s01224p00002240 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT2G46560 No alias transducin family protein / WD-40 repeat family protein 0.15 OrthoFinder output from all 47 species
Adi_g010442 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.08 OrthoFinder output from all 47 species
Aev_g19704 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.09 OrthoFinder output from all 47 species
Ala_g36990 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Azfi_s0090.g042626 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.37G060800.1 Ceric.37G060800 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.12 OrthoFinder output from all 47 species
Cre04.g223000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09007 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.07 OrthoFinder output from all 47 species
Dde_g11916 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ehy_g05116 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
GSVIVT01027171001 No alias No description available 0.1 OrthoFinder output from all 47 species
LOC_Os01g37120.1 LOC_Os01g37120 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g08851 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
MA_10437076g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_177408g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g21310.1 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Msp_g25735 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.07 OrthoFinder output from all 47 species
Ore_g29898 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Pir_g15335 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s2320.g028304 No alias not classified & original description: CDS=1-1296 0.06 OrthoFinder output from all 47 species
Sam_g52672 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.06 OrthoFinder output from all 47 species
Solyc01g096110.3.1 Solyc01g096110 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Spa_g22202 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Tin_g11344 No alias substrate adaptor of CUL4-based E3 ubiquiTin ligase... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 2293 2324
IPR022033 Rav1p_C 877 1415
No external refs found!