Len_g24104

Description : RsmB-type rRNA methyltransferase & original description: none

Gene families : OG0006886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006886_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g24104

Target	Alias	Description	ECC score	Gene Family Method
AT3G13180	No alias	NOL1/NOP2/sun family protein / antitermination NusB...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000903.6	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dde_g01522	No alias	RsmB-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Gb_26778	No alias	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os09g30100.1	LOC_Os09g30100	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Sam_g13752	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g50907	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001678	MeTrfase_RsmB/NOP2	348	543
IPR006027	NusB_RsmB_TIM44	123	220

External Links

No external refs found!