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  5. Len_g23449

Len_g23449


Description : not classified & original description: none


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g23449

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Als_g08643 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g33944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g15563 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47863 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g44098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g58297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 72 92
IPR025605 OST-HTH/LOTUS_dom 122 198
IPR000504 RRM_dom 239 291
IPR018957 Znf_C3HC4_RING-type 537 575
No external refs found!