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  5. AMTR_s00011p00262800

AMTR_s00011p00262800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.199

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.SAWADEE transcription factor


Gene families : OG_01_0002006 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002006_tree ,
OG_02_0001458 (LandPlants) Phylogenetic Tree(s): OG_02_0001458_tree ,
OG_03_0001429 (SeedPlants) Phylogenetic Tree(s): OG_03_0001429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00262800
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
Mp3g06860.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 Archaeplastida
Solyc10g007130.4.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida
Zm00001e033896_P001 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida
Mp3g06860.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 LandPlants
Solyc10g007130.4.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 LandPlants
Solyc10g007130.4.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 13 75
No external refs found!