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  5. Len_g23067

Len_g23067 (AGO1)


Aliases : AGO1

Description : miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g23067

Target Alias Description ECC score Gene Family Method Actions
Ala_g33064 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Ala_g34221 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g17789 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G056900.1 AGO1, Ceric.28G056900 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.05 OrthoFinder output from all 47 species
Ehy_g05037 PNH, AGO10, ZLL not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_118377g0010 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Sam_g22874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g073540.4.1 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Zm00001e017367_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Zm00001e034598_P001 AGO1, Zm00001e034598 Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR014811 ArgoL1 493 543
IPR003100 PAZ_dom 556 674
IPR032474 Argonaute_N 349 483
IPR003165 Piwi 833 1152
IPR032472 ArgoL2 684 730
IPR032473 Argonaute_Mid_dom 741 819
No external refs found!