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  5. Len_g22564

Len_g22564 (At-RS41, RS41, ATRSP41)


Aliases : At-RS41, RS41, ATRSP41

Description : RNA splicing factor *(RS31/40/41) & original description: none


Gene families : OG0002134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g22564

Target Alias Description ECC score Gene Family Method Actions
Adi_g006284 At-RS31a, RS31a RNA splicing factor *(RS31/40/41) & original description: none 0.02 OrthoFinder output from all 47 species
Cre16.g674250 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
LOC_Os02g03040.1 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Solyc10g009330.3.1 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc11g072340.2.1 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e013507_P001 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e039070_P001 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Zm00001e040621_P001 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 57 119
No external refs found!