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  5. Len_g22463

Len_g22463


Description : RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex & original description: none


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g22463

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 OrthoFinder output from all 47 species
Ala_g07801 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aob_g06073 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aob_g12480 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Aop_g27842 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aspi01Gene15979.t1 HEN2, Aspi01Gene15979 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07746 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Cre06.g289950 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder output from all 47 species
Dde_g31250 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
GSVIVT01024809001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01032255001 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.05 OrthoFinder output from all 47 species
MA_10426385g0010 HEN2 DExH-box ATP-dependent RNA helicase DExH10... 0.04 OrthoFinder output from all 47 species
MA_10437094g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.03 OrthoFinder output from all 47 species
MA_167255g0020 HEN2 DExH-box ATP-dependent RNA helicase DExH10... 0.06 OrthoFinder output from all 47 species
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 OrthoFinder output from all 47 species
Msp_g15177 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.07 OrthoFinder output from all 47 species
Msp_g24073 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.04 OrthoFinder output from all 47 species
Nbi_g03153 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Ore_g03731 HEN2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07586 HEN2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16077 HEN2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10573 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 OrthoFinder output from all 47 species
Sam_g45216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo79650 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
Solyc06g005990.4.1 Solyc06g005990 DExH-box ATP-dependent RNA helicase DExH11... 0.04 OrthoFinder output from all 47 species
Solyc12g017860.3.1 HEN2, Solyc12g017860 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Spa_g11434 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Spa_g29638 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 817 987
IPR011545 DEAD/DEAH_box_helicase_dom 71 218
IPR001650 Helicase_C 339 460
IPR025696 rRNA_proc-arch_dom 514 790
No external refs found!