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  5. Len_g21245

Len_g21245


Description : component *(eS8) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g21245

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT5G20290 No alias Ribosomal protein S8e family protein 0.04 OrthoFinder output from all 47 species
Aev_g10713 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g32909 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.01G124400.1 Ceric.01G124400 component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.12G096700.1 Ceric.12G096700 component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Dac_g03069 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Gb_28325 No alias component RPS8 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os02g28810.1 LOC_Os02g28810 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.03 OrthoFinder output from all 47 species
Msp_g01868 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g01823 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ore_g02405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02421 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c13_20020V3.1 Pp3c13_20020 Ribosomal protein S8e family protein 0.04 OrthoFinder output from all 47 species
Pp3c19_6490V3.1 Pp3c19_6490 Ribosomal protein S8e family protein 0.01 OrthoFinder output from all 47 species
Pp3c4_11370V3.1 Pp3c4_11370 Ribosomal protein S8e family protein 0.01 OrthoFinder output from all 47 species
Sam_g06814 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27314 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g11102 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g25236 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g53727 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Tin_g03723 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e004092_P002 Zm00001e004092 component RPS8 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e024995_P001 Zm00001e024995 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e024996_P001 Zm00001e024996 component RPS8 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e024999_P001 Zm00001e024999 component RPS8 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 5 198
No external refs found!