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  5. Len_g21029

Len_g21029


Description : not classified & original description: none


Gene families : OG0009876 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009876_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g21029
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Ala_g14939 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g00293 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Azfi_s0319.g064448 No alias not classified & original description: CDS=1-549 0.03 OrthoFinder output from all 47 species
Ceric.03G063600.1 Ceric.03G063600 not classified & original description: pacid=50572505... 0.1 OrthoFinder output from all 47 species
Ceric.08G047800.1 DRT112, PETE2,... not classified & original description: pacid=50638189... 0.07 OrthoFinder output from all 47 species
Dac_g01986 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dcu_g00411 No alias not classified & original description: none 0.16 OrthoFinder output from all 47 species
Msp_g12705 DRT112, PETE2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05591 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g00240 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g11153 DRT112, PETE2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018495 PETE1 not classified & original description: CDS=1-633 0.04 OrthoFinder output from all 47 species
Sam_g04763 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Sam_g14165 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g10207 DRT112, PETE2 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g10633 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g00345 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0009055 electron transfer activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000923 BlueCu_1 77 177
No external refs found!