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  5. Len_g20674

Len_g20674


Description : scaffold component *(LCAA) of Mg-protoporphyrin IX monomethylester cyclase complex & original description: none


Gene families : OG0006125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20674
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00179590 evm_27.TU.AmTr_v1... Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll... 0.15 OrthoFinder output from all 47 species
AT5G58250 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.11 OrthoFinder output from all 47 species
Adi_g008816 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.05 OrthoFinder output from all 47 species
Aev_g02557 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.02 OrthoFinder output from all 47 species
Als_g04177 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.05 OrthoFinder output from all 47 species
Aop_g18009 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.05 OrthoFinder output from all 47 species
Ceric.30G052300.1 Ceric.30G052300 scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.08 OrthoFinder output from all 47 species
Dcu_g18827 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.13 OrthoFinder output from all 47 species
Ehy_g15832 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.1 OrthoFinder output from all 47 species
GSVIVT01024524001 No alias Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll... 0.11 OrthoFinder output from all 47 species
Gb_09919 No alias scaffolding component LCAA of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
LOC_Os03g21370.1 LOC_Os03g21370 scaffolding component LCAA of Mg-protoporphyrin IX... 0.12 OrthoFinder output from all 47 species
Lfl_g00499 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
MA_46214g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g08000.1 No alias scaffolding component LCAA of Mg-protoporphyrin IX... 0.13 OrthoFinder output from all 47 species
Msp_g10285 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.06 OrthoFinder output from all 47 species
Nbi_g03333 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Ore_g04898 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.05 OrthoFinder output from all 47 species
Pir_g07610 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0217.g026072 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.05 OrthoFinder output from all 47 species
Sam_g06125 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Solyc06g007760.4.1 Solyc06g007760 scaffolding component LCAA of Mg-protoporphyrin IX... 0.09 OrthoFinder output from all 47 species
Spa_g16999 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.11 OrthoFinder output from all 47 species
Tin_g09552 No alias scaffold component *(LCAA) of Mg-protoporphyrin IX... 0.03 OrthoFinder output from all 47 species
Zm00001e001556_P001 Zm00001e001556 scaffolding component LCAA of Mg-protoporphyrin IX... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR019616 Ycf54 87 176
No external refs found!