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  5. Len_g20657

Len_g20657


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20657
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Adi_g021084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07187 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.02 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0254.g060427 No alias not classified & original description: CDS=1-2130 0.03 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g05221 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05328 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07596 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29903 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G006400.1 Ceric.16G006400 not classified & original description: pacid=50590241... 0.02 OrthoFinder output from all 47 species
Ceric.17G075500.1 Ceric.17G075500 not classified & original description: pacid=50617952... 0.03 OrthoFinder output from all 47 species
Ceric.34G015500.1 OTP84, Ceric.34G015500 not classified & original description: pacid=50623596... 0.03 OrthoFinder output from all 47 species
Ceric.36G038100.1 Ceric.36G038100 not classified & original description: pacid=50568680... 0.03 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.02 OrthoFinder output from all 47 species
Dac_g10610 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18859 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004387 No alias not classified & original description: CDS=1-2973 0.03 OrthoFinder output from all 47 species
Spa_g08784 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15075 DOT4 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34089 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 665 712
IPR002885 Pentatricopeptide_repeat 314 359
IPR002885 Pentatricopeptide_repeat 98 144
IPR002885 Pentatricopeptide_repeat 198 245
IPR002885 Pentatricopeptide_repeat 782 828
IPR002885 Pentatricopeptide_repeat 434 461
IPR002885 Pentatricopeptide_repeat 639 659
IPR002885 Pentatricopeptide_repeat 957 981
IPR002885 Pentatricopeptide_repeat 882 929
IPR002885 Pentatricopeptide_repeat 545 595
No external refs found!