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  5. Len_g20630

Len_g20630 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20630

Target Alias Description ECC score Gene Family Method Actions
Adi_g042703 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36240 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g60010 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Len_g20629 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Nbi_g13849 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Sam_g10496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 718 913
IPR018999 UPF1_CH/ZBD 157 308
IPR006935 Helicase/UvrB_N 508 573
IPR041677 DNA2/NAM7_AAA_11 611 708
IPR040812 UPF1_1B_dom 360 449
No external refs found!