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  5. Len_g20481

Len_g20481


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0001662 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001662_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20481

Target Alias Description ECC score Gene Family Method Actions
Adi_g056893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01285 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12539 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g07620.1 No alias U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e021871_P001 Zm00001e021871 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e029161_P003 Zm00001e029161 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 243 313
IPR000225 Armadillo 528 567
IPR000225 Armadillo 653 690
IPR000225 Armadillo 611 649
No external refs found!