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  5. AT4G00190

AT4G00190 (PME38, ATPME38)


Aliases : PME38, ATPME38

Description : pectin methylesterase 38


Gene families : OG_01_0000046 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000046_tree ,
OG_02_0000020 (LandPlants) Phylogenetic Tree(s): OG_02_0000020_tree ,
OG_03_0040913 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G00190
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00242180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AMTR_s00105p00078750 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT4G02300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g57854.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os05g29790.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os11g08750.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_101025g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_5681731g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo266995 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc02g080200.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g078100.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e011069_P001 No alias pectin methylesterase 0.07 Archaeplastida
Zm00001e041757_P001 No alias pectin methylesterase 0.03 Archaeplastida
AMTR_s00105p00078750 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 LandPlants
AT4G02300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 LandPlants
MA_101025g0010 No alias pectin methylesterase 0.02 LandPlants
Zm00001e011069_P001 No alias pectin methylesterase 0.02 LandPlants
Zm00001e017514_P001 No alias pectin methylesterase 0.02 LandPlants

Type GO Term Name Evidence Source
CC GO:0009505 plant-type cell wall ISS Interproscan
MF GO:0030599 pectinesterase activity ISS Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 6 120
IPR000070 Pectinesterase_cat 164 459
No external refs found!